BIC-CCMB

Preprints

Long-read genome sequence and assembly of Leptopilina boulardi: a specialist Drosophila parasitoid

Shagufta Khan, Divya Tej Sowpati, Rakesh K Mishra

BioRxiv , doi: 10.1101/284679

Patterns of microsatellite distribution reflect the evolution of biological complexity

Surabhi Srivastava, Akshay Kumar Avvaru, Divya Tej Sowpati, Rakesh K Mishra

BioRxiv , doi: 10.1101/253930

Peer-reviewed publications

2018

Epigenomic and genomic landscape of Drosophila melanogaster heterochromatic genes

Parna Saha, Divya Tej Sowpati, Rakesh K Mishra

Genomics , Feb 10 2018
doi: 10.1016/j.ygeno.2018.02.001

PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences

Akshay Kumar Avvaru, Divya Tej Sowpati, Rakesh K Mishra

Bioinformatics , Mar 15 2018
doi: 10.1093/bioinformatics/btx721

Distinguishing States of Arrest: Genome-Wide Descriptions of Cellular Quiescence Using ChIP-Seq and RNA-Seq Analysis

Surabhi Srivastava, Hardik P Gala, Rakesh K Mishra, Jyotsna Dhawan

Methods Mol Biol , 2018
doi: 10.1007/978-1-4939-7371-2_16

2017

C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search

Divya Tej Sowpati, Surabhi Srivastava, Jyotsna Dhawan, Rakesh K Mishra

BMC Bioinformatics , Sep 13 2017
doi: 10.1186/s12859-017-1786-6

MSDB: A Comprehensive Database of Simple Sequence Repeats

Akshay Kumar Avvaru, Saketh Saxena, Divya Tej Sowpati, Rakesh K Mishra

Genome Biol Evol , Jun 1 2017
doi: 10.1093/gbe/evx132

2016

Single Amino Acid Repeats in the Proteome World: Structural, Functional, and Evolutionary Insights

Amitha Sampath Kumar, Divya Tej Sowpati, Rakesh K Mishra

PLoS One , Nov 28 2016
doi: 10.1371/journal.pone.0166854

Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection

Garima Sharma, Divya Tej Sowpati, Prakruti Singh, Mehak Zahoor Khan, Rakesh Ganji, Sandeep Upadhyay, Sharmistha Banerjee, Vinay Kumar Nandicoori, Sanjeev Khosla

Sci Rep , Apr 26 2016
doi: 10.1038/srep25006

Older

Expansion of the polycomb system and evolution of complexity

Divya Tej Sowpati, Senthilkumar Ramamoorthy, Rakesh K Mishra

Mech Dev , Nov 2015
doi: 10.1016/j.mod.2015.07.013

Genome-wide mapping of matrix attachment regions in Drosophila melanogaster

Rashmi Upadhyay Pathak, Arumugam Srinivasan, Rakesh K Mishra

BMC Genomics , Nov 25 2014
doi: 10.1186/1471-2164-15-1022

Length and sequence dependent accumulation of simple sequence repeats in vertebrates: Potential role in genome organization and regulation

Ramamoorthy Senthilkumar, Hita S Garapati, Rakesh K Mishra

Gene , Nov 10 2014
doi: 10.1016/j.gene.2014.08.052

A ChIP-on-chip tiling array approach detects functional histone-free regions associated with boundaries at vertebrate HOX genes

Surabhi Srivastava, Divya Tej Sowpati, Hita S Garapati, Deepika Puri, Jyotsna Dhawan, Rakesh K Mishra

Genom Data , May 10 2014
doi: 10.1016/j.gdata.2014.05.001

Vertebrate GAGA factor associated insulator elements demarcate homeotic genes in the HOX clusters

Surabhi Srivastava, Deepika Puri, Hita S Garapati, Jyotsna Dhawan, Rakesh K Mishra

Epigenetics Chromatin , Apr 22 2013
doi: 10.1186/1756-8935-6-8

Chromatin domain boundary element search tool for Drosophila

Arumugam Srinivasan, Rakesh K Mishra

Nucleic Acids Res , May 1 2012
doi: 10.1093/nar/gks045

Epigenetic profile of the euchromatic region of human Y chromosome

Narendra P Singh, Madabhushi SR, Surabhi Srivastava, Ramamoorthy Senthilkumar, Neeraja C, Sanjeev Khosla, Rakesh K Mishra

Nucleic Acids Res , May 2011
doi: 10.1093/nar/gkq1342

For a full list of publications from RKMlab, see this page.