CCMB-CSIR logo Structural Biology

Centre for Cellular and Molecular Biology
Hyderabad,INDIA
CSIR-CCMB
Sankar's Lab

 

Useful Links for Protein Crystallography

 

Databases and Servers
RCSB Protein Data Bank (RCSB PDB)
WorldWide Protein Data Bank (wwPDB)
EBI Protein Data Bank (PDBe)
Electron Density Server (EDS)
Multiple Sequence Alignment (MSA)
Basic Local Alignment Search Tool BLAST/NCBI
SCOP: Structural Classification of Proteins
UniProt
ESPript
NCBI-Protein

 

Sites for Materials and Tools
Hampton Research- Crystallization Products
Jena Bioscience- Crystallization Kits and Screens
marXperts- X-ray Data Collection Products
RIGAKU-X-ray Diffraction Products

 

Crystallography Software
Data Processing
automar
CrystalClear-using d*TREK
HKL Package
 
Phasing
CCP4
SOLVE/RESOLVE
PHENIX
 
Refinement
CNS
Coot
 
Validation
Procheck
WHAT_CHECK
MolProbity
WwPDB Validation
CheckMyMetal(CMM):Metal Binding Site Validation
 
Ligands and Docking
HIC-Up
PRODRG2
 
Channels, Pores & Tunnels
MOLE
CAVER
ChExVis
PoreWalker
 
Molecular Modeling & Vizualization
O
PyMol
VMD
WHAT IF
 
Structural Alignment
RAPIDO
STRAP
3d-SS
 
Structural Analysis
USF-Uppsala Software Factory
CaPTURE- cation-pi interactions
CASTp- Surface Topology
ConSurf
GROMACS
Naccess
PDBePISA
SSBOND
TOPS