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Homeotic Genes: Clustering, Modularity, and Diversity
Nikhil Hajirnis, Rakesh K Mishra
Front Cell Dev Biol. 2021 Aug 11;9:718308. doi: 10.3389/fcell.2021.718308. [PubMed]

Satb2 acts as a gatekeeper for major developmental transitions during early vertebrate embryogenesis
Saurabh J Pradhan, Puli Chandramouli Reddy, Michael Smutny, Ankita Sharma, Keisuke Sako, Meghana S Oak, Rini Shah, Mrinmoy Pal, Ojas Deshpande, Greg Dsilva, Yin Tang, Rakesh Mishra, Girish Deshpande, Antonio J Giraldez, Mahendra Sonawane, Carl-Philipp Heisenberg, Sanjeev Galande
Nat Commun. 2021 Oct 19;12(1):6094. doi: 10.1038/s41467-021-26234-7. [PubMed]

Temporal stability and detection sensitivity of the dry swab-based diagnosis of SARS-CoV-2
C G Gokulan, Uday Kiran, Santosh Kumar Kuncha, Rakesh K Mishra
J Biosci. 2021;46(4):95. doi: 10.1007/s12038-021-00216-9. [PubMed]

Corrigendum to "Defining the methodological approach for wastewater-based epidemiological studies-Surveillance of SARS-CoV-2" [Environ. Technol. Innov. 23 (2021) 101696]
Harishankar Kopperi, Athmakuri Tharak, Manupati Hemalatha, Uday Kiran, C G Gokulan, Rakesh K Mishra, S Venkata Mohan
Environ Technol Innov. 2021 Nov;24:101864. doi: 10.1016/j.eti.2021.101864. [PubMed]

Genomic organization of the autonomous regulatory domain of eyeless locus in Drosophila melanogaster
Shreekant Verma, Rashmi U Pathak, Rakesh K Mishra
G3 (Bethesda). 2021 Sep 27;jkab338. doi: 10.1093/g3journal/jkab338. [PubMed]

Experiments with Drosophila for Biology Courses (Edited by S. C. Lakhotia and H. A. Ranganath; Published by Indian Academy of Sciences, Bengaluru) ISBN: 978-81-950664-2-1
Runa Hamid & Rakesh K. Mishra
Proc.Indian Natl. Sci. Acad. 87, 423–426 (2021). https://doi.org/10.1007/s43538-021-00042-5.

The role of nuclear organization in trans-splicing based expression of heat shock protein 90 in Giardia lamblia
Vinithra Iyer, Sheetal Tushir, Shreekant Verma, Sudeshna Majumdar, Srimonta Gayen, Rakesh Mishra, Utpal Tatu
PLoS Negl Trop Dis. 2021 Sep 24;15(9):e0009810. doi: 10.1371/journal.pntd.0009810. [PubMed]

Drosophila Hox genes induce melanized pseudo-tumors when misexpressed in hemocytes
Titus Ponrathnam, Ravina Saini, Sofia Banu, Rakesh K Mishra
Sci Rep. 2021 Jan 19;11(1):1838. doi: 10.1038/s41598-021-81472-5. [PubMed]

Deterioration of nuclear morphology and architecture: A hallmark of senescence and aging
Rashmi Upadhyay Pathak, Mamilla Soujanya, Rakesh Kumar Mishra
Ageing Res Rev. 2021 May;67:101264. doi: 10.1016/j.arr.2021.101264. [PubMed]

Global chromatin organizer SATB1 acts as a context-dependent regulator of the Wnt/Wg target genes PL
Praveena L Ramanujam, Sonam Mehrotra, Ram Parikshan Kumar, Shreekant Verma, Girish Deshpande, Rakesh K Mishra, Sanjeev Galande
Sci Rep. 2021 Feb 9;11(1):3385. doi: 10.1038/s41598-021-81324-2. [PubMed]

Tissue-specific transcriptome recovery on withdrawal from chronic alcohol exposure in zebrafish
Sofia Banu, Surabhi Srivastava, Arif Mohammed, Gopal Kushawah, Divya Tej Sowpati, Rakesh K Mishra
Alcohol. 2021 Mar;91:29-38. doi: 10.1016/j.alcohol.2020.10.001. [PubMed]

Surveillance of SARS-CoV-2 spread using wastewater-based epidemiology: Comprehensive study
Manupati Hemalatha, Uday Kiran, Santosh Kumar Kuncha, Harishankar Kopperi, C G Gokulan, S Venkata Mohan, Rakesh K Mishra
Sci Total Environ. 2021 May 10;768:144704. doi: 10.1016/j.scitotenv.2020.144704. [PubMed]

SARS-CoV-2 genomics: An Indian perspective on sequencing viral variants
Surabhi Srivastava, Sofia Banu, Priya Singh, Divya Tej Sowpati, Rakesh K Mishra
J Biosci. 2021;46(1):22. doi: 10.1007/s12038-021-00145-7. [PubMed]

Host transcriptional response to SARS-CoV-2 infection in COVID-19 patients
Nitesh Kumar Singh, Surabhi Srivastava, Lamuk Zaveri, Thrilok Chander Bingi, Rajarao Mesipogu, Santosh Kumar V, Namami Gaur, Nikhil Hajirnis, Pratheusa Machha , Sakshi Shambhavi , Shagufta Khan, Mamilla Soujanya, Tulasi Nagabandi, Rakesh K Mishra, Karthik Bharadwaj Tallapaka, Divya Tej Sowpati
Clin Transl Med. 2021 Sep;11(9):e534. doi: 10.1002/ctm2.534. [PubMed]

Role of vertebrate GAGA associated factor (vGAF) in early development of zebrafish
Navneet K Matharu, Sonu Yadav, Megha Kumar, Rakesh K Mishra
Cells Dev. 2021 Jun;166:203682. doi: 10.1016/j.cdev.2021.203682. [PubMed]

A distinct phylogenetic cluster of Indian severe acute respiratory syndrome coronavirus 2 isolates
Sofia Banu, Bani Jolly, Payel Mukherjee, Priya Singh, Shagufta Khan, Lamuk Zaveri, Sakshi Shambhavi, Namami Gaur, Shashikala Reddy, K Kaveri, Sivasubramanian Srinivasan, Dhinakar Raj Gopal, Archana Bharadwaj Siva, Kumarasamy Thangaraj, Karthik Bharadwaj Tallapaka, Rakesh K Mishra, Vinod Scaria, Divya Tej Sowpati
Open Forum Infect Dis. 2020 Sep 18;7(11):ofaa434. doi: 10.1093/ofid/ofaa434. [PubMed]

Interplay of pericentromeric genome organization and chromatin landscape regulates the expression of Drosophila melanogaster heterochromatic genes
Parna Saha , Divya Tej Sowpati, Mamilla Soujanya, Ishanee Srivastava, Rakesh Kumar Mishra
Epigenetics Chromatin. 2020 Oct 7;13(1):41. doi: 10.1186/s13072-020-00358-4. [PubMed]

Identification of evolutionarily conserved nuclear matrix proteins and their prokaryotic origins
Rahul Sureka, Rakesh Mishra
J Proteome Res. 2021 Jan 1;20(1):518-530. doi: 10.1021/acs.jproteome.0c00550. [PubMed]

Easing diagnosis and pushing the detection limits of SARS-CoV-2
Uday Kiran, C G Gokulan, Santosh Kumar Kuncha, Dhiviya Vedagiri, Bingi Thrilok Chander, Aedula Vinaya Sekhar, Suchitra Dontamala, Arakatla Lohith Reddy, Karthik Bharadwaj Tallapaka, Rakesh K Mishra, Krishnan Harinivas Harshan
Biol Methods Protoc. 2020 Aug 20;5(1):bpaa017. doi: 10.1093/biomethods/bpaa017. [PubMed]

Comparative nuclear matrix proteome analysis of skeletal muscle cells in different cellular states
Deepika Puri, Ch V B Swamy, Jyotsna Dhawan, Rakesh K Mishra
Cell Biol Int. 2021 Mar;45(3):580-598. doi: 10.1002/cbin.11499. [PubMed]

Testing and surveillance strategies in the context of COVID-19 in India
Somdatta Karak,Surabhi Srivastava &Rakesh K Mishra
Indian Chemical Engineer. https://doi.org/10.1080/00194506.2020.1831408.

Lessons on gene regulation learnt from the Drosophila melanogaster bithorax complex.
Arumugam Srinivasan and Rakesh K Mishra.
Int J Dev Biol. 2020;64(1-2-3):151-158. doi: 10.1387/ijdb.190167rm [PubMed]

Long-Read Genome Sequencing and Assembly of Leptopilina boulardi: A Specialist Drosophila Parasitoid
Shagufta Khan, Divya Tej Sowpati, Arumugam Srinivasan, Mamilla Soujanya Rakesh K. Mishra
G3 (Bethesda). 2020 May 4;10(5):1485-1494. doi: 10.1534/g3.120.401151. [PubMed]

Sperm methylome alterations following yoga-based lifestyle intervention in patients of primary male infertility: A pilot study
Shilpa Bisht, Sofia Banu, Surabhi Srivastava, Rashmi U. Pathak, Rajeev Kumar, Rima Dada, Rakesh K. Mishra
Andrologia. 2020 May;52(4):e13551. doi: 10.1111/and.13551. [PubMed]

Interactome of vertebrate GAF/ThPOK reveals its diverse functions in gene regulation and DNA repair.
Avinash Srivastava, Rakesh K Mishra
J Biosci (2020) 45:38 doi: 10.1007/s12038-020-0014-0 [PubMed]

Genomic organization of Polycomb Response Elements and its functional implication in Drosophila and other insects.
Arumugam Srinivasan, Rakesh K Mishra
J Biosci (2020) 45:12 DOI: 10.1007/s12038-019-9975-2 [PubMed]

MSDB: a comprehensive, annotated database of microsatellites.
Akshay Kumar Avvaru, Deepak Sharma, Archana Verma, Rakesh K Mishra, Divya Tej Sowpati
Nucleic Acids Res. 2020 Jan 8; 48(D1):D155-D159. doi: 10.1093/nar/gkz886. [PubMed]

SETDB1 modulates the differentiation of both the crystal cells and the lamellocytes in Drosophila
Indira Paddibhatla, Dushyant K Gautam, Rakesh K Mishra
Dev Biol. 2019 Dec 1; 456(1):74-85. doi: 10.1016/j.ydbio.2019.08.008. [PubMed]

Heterochromatic hues of transcription-the diverse roles of noncoding transcripts from constitutive heterochromatin.
Parna Saha, Rakesh K Mishra
FEBS J. 2019 Dec; 286(23):4626-4641. doi: 10.1111/febs.15104. [PubMed]

Activation of Su(Hw)-Controlled Genes Is Associated with Increase in GAF Binding.
P V Elizar'ev, D A Chetverina, L S Melnikova, A Srivastava, Rakesh K Mishra, A K Golovnin, P G Georgiev, M M Erokhin
Dokl Biochem Biophys. 2019 Sep; 488(1):293-295. doi: 10.1134/S1607672919050016. [PubMed]

Patterns of microsatellite distribution across eukaryotic genomes.
Srivastava S, Avvaru AK, Sowpati DT, Mishra RK.
BMC Genomics. 2019 Feb 22;20(1):153. doi: 10.1186/s12864-019-5516-5. [PubMed]

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