CSIR-CCMB

Next Generation Sequencing Facility

From Molecules to Genomes

A state-of-the-art genomics platform supporting cutting-edge research, clinical diagnostics, and national genomics initiatives.

20,000+

Samples Processed

50+

Publications supported by NGS facility

10+

Major project supported by NGS facility

Who We Are

About the Facility

The Next Generation Sequencing (NGS) Facility at CSIR-CCMB (Established in 2019) is a premier genomics platform equipped with high-throughput short-read, long-read, single-cell, and optical mapping technologies.

Facility Overview

The Next Generation Sequencing (NGS) Facility at CSIR-CCMB is a state-of-the-art genomics platform supporting cutting-edge research and large-scale national genomics initiatives. The facility is equipped with advanced sequencing technologies, including the Illumina NovaSeq 6000, MGISEQ 2000, Oxford Nanopore PromethION P24, GridION, and 10X Genomics single-cell platforms, complemented by automated liquid handling systems from TECAN, MGI, Mosquito and Dragonfly for high-throughput library preparation. The facility provides rapid, accurate, and reliable sequencing solutions for a wide range of applications, including whole genome sequencing, whole exome and targeted panel sequencing, transcriptomics, metagenomics, single-cell genomics, structural variant analysis, and clinical genomics. In addition to serving CSIR-CCMB research programs, the facility offers sequencing services to academic institutions, hospitals, and industry partners across India

Mission Statement

To be a premier genomics and sequencing facility that drives scientific discovery, innovation, and translational research by providing world-class next-generation sequencing technologies, high-quality data, and comprehensive genomics solutions. We aim to empower researchers, clinicians, and industry partners through cutting-edge platforms, automation, and expertise, thereby contributing to advancements in life sciences, precision medicine, agriculture, biodiversity, and national genomics initiatives

Instrumentation

Sequencing & QC Platforms

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Sequencing Systems

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QC & Mapping Systems

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What We Offer

Services Offered

Genomics
  • Whole Genome Sequencing (WGS)
  • Whole Exome Sequencing (WES)
  • Amplicon & Targeted Panels
  • Shotgun Metagenomics
  • Long Read Sequencing (Nanopore)
  • Optical Genome Mapping (OGM)
  • Single-Cell Genomics (10X Genomics)
Transcriptomics & Epigenomics
  • Whole Transcriptome (WTS)
  • mRNA-Seq & Small RNA-Seq
  • ChIP-Seq (Chromatin Profiling)
Bioinformatics
  • Quality check, Adapter trimming and Contamination removal
  • De Novo or Referance Based Genome Assembly & Annotation
  • Variant Calling (VCF)
  • Principal Component Analysis
  • Differential Gene Expression Analysis (Volcano plot and Heatmap)
  • GO Enrichment Analysis
Our People

Team

Our multidisciplinary team of scientists, technical experts, and bioinformaticians drives every project through the facility.

Meet the Team
Get Started

Sample Submission

Initiate Sample Submission

Please choose the appropriate submission channel based on your organizational affiliation.

Impact

Major project supported by NGS facility

Some of the ongoing and past projects:

Wastewater Surveillance

Implementation of Wastewater Surveillance for Multi-pathogens across India

Syndromic Metagenomics

Establishing a metagenomic NGS surveillance model utilizing a syndromic approach in India

GenomeIndia

GenomeIndia project

APSI-India Initiative

The Alliance for Pathogen Surveillance Innovations (APSI-India) - Wastewater surveillance to detect pathogens of public health concern

InTGS Consortium

Indian tuberculosis sequencing consortium (InTGS)

Cancer Genomics

Indian Breast Cancer Genome Atlas project

Viral Genomics

SARS-CoV-2 genome sequencing

In addition, the NGS facility has contributed to various omics related projects of researchers within CSIR-CCMB and other research institutes and universities.

Research Output

Publications supported by NGS facility

2026
2025
Capacity Building

Training Programs

Past Training Programs

Completed
Skill Development Program on “Next-Generation Sequencing and Bioinformatics: From Bench to Insight”

Dates: 16th – 20th February 2026

Reach Us

Contact Us

Facility Address

Main Building, Central Area
First Floor, Room No: C203
CSIR-Centre for Cellular and Molecular Biology (CCMB)
Uppal Road, Hyderabad, Telangana - 500007, India


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Contact Information

Dr. Subhajit Sen

Scientist - C

subhajitsen.ccmb@csir.res.in