C-State v0.2.4

v0.2.4-dev

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Files

	Select Species	Select Build
Load Gene List/C-State Data

File Selected	Select File Type	Select Identifier		Upstream Flank (in KB)	Downstream Flank (in KB)
{{ inputFile.name }} No File Selected

OR

of Cell Types

Load Feature Files

Load Expression Data

Expression Data Files Selected: {{ expFiles.length }}

File Name	CellType Name

Feature Files Selected: {{ inputFiles.length }}

File Name	CellType Name	Feature Name	File Format

View - Showing {{numFilteredGenes}} of {{genes.length}} genes {{activeFilters}} Active Filter(s) Feature cut-offs active|

Scale in KB

Show histogram of Color By

CellType/Feature	{{feature.name}}
{{celltype.name}}

CellType/Feature	{{celltype.name}}
{{feature.name}}

Show Genes Show Entire Regions Show TSS only

Upstream	Downstream
KB	KB

CellType/Feature	{{feature.name}}
{{celltype.name}}

CellType/Feature	{{celltype.name}}
{{feature.name}}

Show Genes Show diagonal line

Axis min

Axis max

{{ycell.name}}
	{{celltype.name}}

	Min	Max
Expression range
Color palette		Reverse
Plot style:	Color scale bar on the left Color the gene body bar

Genes	pixels
Regions	pixels
Features	pixels
Neighbors	pixels

Genes	{{scope.settings.mainPanel.geneBarColor}}
Regions	{{scope.settings.mainPanel.regionBarColor}}
Neighbors	{{scope.settings.mainPanel.neighborBarColor}}

Color palette:		Reverse
Plot style:	Color scale bar on the left Color the gene body bar

Genes	pixels
Regions	pixels
Features	pixels
Neighbors	pixels

Files

View - Showing {{numFilteredGenes}} of {{genes.length}} genes {{activeFilters}} Active Filter(s) Feature cut-offs active|

Gene Name Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)

Gene Size Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)

Gene Expression Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)

Chromosome Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)

Feature Counts Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)

Overlaps Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)

Neighbor Counts Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)

Genes	{{scope.settings.geneModal.geneBarColor}}
Regions	{{scope.settings.geneModal.regionBarColor}}
Neighbors	{{scope.settings.geneModal.neighborBarColor}}

Start coordinate	Stop coordinate

First Feature	Relation	Second Feature

Files

View - Showing {{numFilteredGenes}} of {{genes.length}} genes {{activeFilters}} Active Filter(s) Feature cut-offs active|

Filters Panel

Show/Hide genes that match the criteria set using any combination of the filters provided below

Available Filters

Click on a filter to add it

Filter Genes By

Active Filters

All active filters will be chained and applied sequentially once you click "Apply Filters" below

View Panel Settings

Gene Modal Settings

Feature Track Settings

Selected Track Colors ({{scope.settings.general.colors.length}} colors)

Available Color Schemes

Gene Name Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)

Gene Size Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)

Gene Expression Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)

Chromosome Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)

Feature Counts Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)

Overlaps Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)

Neighbor Counts Filter

({{ numFiltered[0] }} of {{ numFiltered[1] }} genes filtered out)